Finding sigma54 potential binding sites in a DNA sequence

Please try Sean Richards' implementation of PromScan at http://molbiol-tools.ca/promscan

You can scan your DNA sequence for patterns such as potential sigma54-dependent promoters by clicking here.

Problems?

contact me and it may be possible for me to perform the scans for you.

Create a matrixfile from alignment

You can create a matrixfile for use with the PromScan Perl script from alignment promoters by clicking here.

Find inverted repeats

You can also scan your DNA sequence for inverted repeats by clicking here.


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This page created and maintained by David J. Studholme. Last updated: Thu May 16 22:43:30 GMT 2002