| Position | Strand | Sequence | Score | Description | Distance upstream | Intergenic size |
| 91920 | + | CTGGCATGGCGCTTGCT | 94 | - mlr9115 G COG2513 phosphoenolpyruvate phosphomutase | 151 | 548 |
| 195252 | + | GTGGCACGCCGATTGCG | 92 | - mlr9216 C COG2055 probable malate dehydrogenase | 1096 | 1276 |
| 8086 | - | TTGGCACGGAACATGCT | 91 | - mll9007 M COG0451 hypothetical protein | 153 | 1676 |
| 61172 | + | TTGGCACGGGACATGCA | 90 | - mlr9067 - - unknown protein | 599 | 772 |
| 137966 | + | CTGGCATGGGTTTTGCG | 90 | - mlr9158 C COG0584 unknown protein | 210 | 843 |
| 196308 | + | GTGGCAAGAAATTTGCA | 90 | - mlr9216 C COG2055 probable malate dehydrogenase | 40 | 1276 |
| 101193 | - | TTGGCACGAGTTTTGAT | 88 | - mll9123 C COG2141 NTA monooxygenase component A | 361 | 1124 |
| 198152 | + | TCGGCACGTCCCTTGCA | 88 | - mlr9217 C COG2141 dibenzothiophene desulfurization enzyme | 42 | 746 |
| 84997 | + | ATGCCACGCCGATTGCA | 86 | - mlr9108 K COG1278 cold-shock protein | 551 | 852 |
| 57077 | - | CTGGCACTCGTGCTGCA | 85 | - mll9056 L COG2189 DNA methyltransferase | 136 | 462 |
| 61604 | + | TTGGCATGAATTTTGTT | 85 | - mlr9067 - - unknown protein | 167 | 772 |
| 71601 | - | ATGGCAAACGTCTTGCC | 85 | - mll9087 K COG4957 transcriptional regulator | 97 | 617 |
| 101488 | + | CCGGCATGCAACTTGCT | 85 | - mlr9125 E COG0367 unknown protein | 451 | 1124 |
