| Position | Strand | Sequence | Score | Description | Distance upstream | Intergenic size |
| 405314 | + | GTGGCACACCCCTTGCT | 95 | prpB Z0427 G COG2513 putative phosphonomutase 2 | 52 | 239 |
| 538577 | + | CTGGCACACCGCTTGCA | 94 | glnK Z0562 E COG0347 nitrogen regulatory protein P-II 2 | 70 | 181 |
| 769095 | - | TTGGCACATCTATTGCT | 93 | ybeJ Z0805 E COG0834 putative periplasmic binding transport protein | 207 | 397 |
| 2394780 | - | CTGGCACGGTTGGTGCG | 88 | - Z2654 O COG2377 orf, hypothetical protein | 258 | 274 |
| 3479863 | - | TTGGCACAGTTACTGCA | 88 | yfhG Z3831 - - putative alpha helix protein | 153 | 165 |
| 3687769 | + | ATGGCACGCCTGCTGCG | 88 | yqcE Z4086 G COG0477 putative transport protein | 221 | 244 |
| 4383517 | - | CTGGCACGAGCGGTGCA | 88 | livK Z4829 E COG0683 high-affinity leucine-specific transport system; periplasmic binding protein | 248 | 424 |
| 1505607 | + | TTGGCGCTATTCTTGCT | 87 | - Z1620 - - - | 62 | 497 |
| 1868586 | + | GTGGCACGGAAATTGGT | 87 | - Z2069 - - putative holin protein of prophage CP-933O | 337 | 449 |
| 2791303 | - | GTGGCACTGTCATTGCC | 87 | - Z3136 - - - | 647 | 7459 |
| 3321125 | - | TTGGCATTGTCGTTGCA | 87 | yfeR Z3673m K COG0583 Transcriptional regulator | 44 | 90 |
| 391565 | + | ATGGCACGAGAATTGTA | 86 | yahI Z0412 E COG0549 putative kinase (EC 2.7.2.2). | 175 | 515 |
| 1484879 | - | CTGGCACTGACTGTGCT | 86 | - Z1597 L COG3436 unknown in ISEc8 | 246 | 320 |
| 3591965 | + | ATGGCAAGCCGTTTGCC | 86 | nrdH Z3975 O COG0695 glutaredoxin-like protein; hydrogen donor | 181 | 209 |
| 4279537 | - | ACGGCACCGCGTTTGCT | 86 | ppiA Z4724 O COG0652 peptidyl-prolyl cis-trans isomerase A (rotamase A) | 112 | 271 |
| 4757762 | - | CTGGCACAAGAGATGCT | 86 | - Z5211 - - - | 87 | 301 |
| 4773741 | - | GCGGCACCGGTATTGCT | 86 | - Z5225 N COG3539 putative major fimbrial subuit | 176 | 312 |
| 1795120 | - | CTGGCAGAGCGTTTGCG | 85 | ychF Z1974 J COG0012 putative GTP-binding protein | 20 | 117 |
| 3030662 | - | GTGGAACAACTGTTGCG | 85 | yohI Z3389 J COG0042 putative regulator protein | 79 | 160 |
| 4228453 | + | CTGGCACGGAGTTAGCC | 85 | - Z4650 R COG0663 putative transferase | 2784 | 5837 |
