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| Position | Strand | Sequence | Score | Description | Distance upstream | Intergenic size |
| 63659 | + | TTGGCACGCTTTTTGCT | 96 | - TC0055 - - type III secretion chaperone, putative | 29 | 62 |
| 30018 | + | CTGGCACACTTTTTGCT | 93 | - TC0022 - - conserved hypothetical protein | 30 | 66 |
| 156314 | - | CTGGCACGGAGTTAGCC | 85 | - TC0126 - - hypothetical protein | 1024 | 5755 |