| Position | Strand | Sequence | Score | Description | Distance upstream | Intergenic size |
| 572030 | + | TTGGCACGATTCTTGCT | 97 | BH0538 BH0538 R COG1064 NADP-dependent alcohol dehydrogenase | 25 | 218 |
| 1964871 | + | TTGGCACGAAACTTGCA | 96 | BH1880 BH1880 S COG3535 BH1880~unknown | 12 | 223 |
| 2864445 | + | TTGGCACGATCCTTGCA | 96 | BH2740 BH2740 E COG0506 proline oxidase (proline dehydrohenase) | 25 | 230 |
| 1066388 | + | TTGGCACGCGATTTGCA | 94 | BH0991 BH0991 E COG0160 4-aminobutyrate aminotransferase | 23 | 291 |
| 1896421 | + | TTGGCACAACTTTTGCA | 94 | acoA BH1822 C COG1071 acetoin dehydrogenase E1 component (TPP-dependent alpha subunit) | 45 | 307 |
| 4087733 | - | TTGGCACAGTTTTTGCA | 94 | BH3948 BH3948 E COG0010 arginase | 65 | 371 |
| 4081924 | - | TTGGCACAGGATTTGCA | 93 | rocD BH3943 E COG4992 ornithine aminotransferase | 60 | 272 |
| 742020 | - | CTGGCAAGGGGCTTGCT | 91 | BH0686 BH0686 P COG2076 chaperonin | 196 | 284 |
| 4029494 | - | TTGGCATGAAGCTTGCA | 91 | BH3898 BH3898 I COG4670 acetyl-CoA:acetoacetyl-CoA transferase | 71 | 299 |
| 2892422 | - | TTGGCATAAAACTTGCA | 89 | BH2765 BH2765 E COG0334 leucine dehydrogenase | 67 | 238 |
| 3066271 | - | TTGGCATAGAAATTGCA | 89 | BH2947 BH2947 R COG2358 immunogenic protein | 53 | 160 |
| 11871 | + | TTGGCACAGATCTGGCA | 88 | BH0010 BH0010 - - BH0010~unknown | 226 | 338 |
| 984297 | - | CTGGAACGACGCTTGCC | 86 | BH0910 BH0910 G COG1447 PTS system, cellobiose-specific enzyme II, A component (EIIA-cell) | 416 | 846 |
| 1382816 | + | ATGGCACAAAGGTGGCA | 85 | BH1292 BH1292 - - BH1292~unknown | 181 | 225 |
| 1382838 | + | ATGGCACAAAGGTGGCA | 85 | BH1292 BH1292 - - BH1292~unknown | 159 | 225 |
| 2847227 | - | CTGGCGCGACTCTGGCT | 85 | BH2725 BH2725 G COG1175 lactose transport system (permease) | 72 | 126 |
