| Position | Strand | Sequence | Score | Description | Distance upstream | Intergenic size |
| 975279 | + | TTGGCACGCTTCTTGCT | 97 | - EF1017 - - PTS system, IIB component | 34 | 276 |
| 22250 | + | TTGGCACGAAACTTGCT | 96 | - EF0019 - - PTS system, IIB component | 74 | 202 |
| 728565 | + | TTGGCACGAATGTTGCA | 96 | - EF0769 - - conserved hypothetical protein | 56 | 234 |
| 3080295 | + | TTGGCACAGAACTTGCT | 95 | - EF3210 - - PTS system, IIA component, putative | 9 | 258 |
| 972197 | + | TTGGCACAATTATTGCT | 93 | - EF1012 - - PTS system, IIB component | 32 | 230 |
| 2852859 | - | TTGGCACACTTATTGCT | 93 | - EF2980 - - PTS system, IIA component | 52 | 72 |
| 1892031 | - | TTGGCACTCTTTTTGCT | 91 | - EF1953 - - PTS system, IIC component | 961 | 989 |
| 71910 | + | TTGGCATAGTCCTTGCT | 90 | - EF0071 - - lipoprotein, putative | 33 | 178 |
| 1071809 | + | TTGGCGCTTCTTTTGCT | 85 | - EF1101 - - conserved hypothetical protein | 24 | 70 |
| 2149132 | - | CTGGAACAAGAATTGCT | 85 | - EF2228 - - tryptophanyl-tRNA synthetase | 142 | 162 |
| 2956991 | - | GTGGTACCGCGATTGCA | 85 | - EF3081 - - pheromone binding protein | 83 | 577 |
