| Position | Strand | Sequence | Score | Description | Distance upstream | Intergenic size |
| 1650145 | + | GTGGCACCATTTTTGCA | 92 | - BR1707 - - thiamine-phosphate pyrophosphorylase, putative | 222 | 245 |
| 969089 | - | CTGGCACAGTTTATGCT | 89 | glnB BR1005 - - nitrogen regulatory protein P-II | 76 | 307 |
| 152645 | + | ATGGCCCGCATCTTGCG | 88 | - BR0139 - - lipoprotein, putative | 238 | 269 |
| 350856 | + | ATGGCAATGGTTTTGCT | 87 | - BR0342 - - DNA-binding response regulator, LuxR family | 152 | 2194 |
| 588990 | + | GTGGCACGGAACATGCG | 87 | - BR0602 - - conserved hypothetical protein | 3288 | 3924 |
| 641973 | + | TTGGCAGAAAGATTGCT | 87 | - BR0652 - - RelA/SpoT family protein | 75 | 241 |
| 171917 | - | TTGGCACATCAATCGCA | 85 | sppA BR0154 - - signal peptide peptidase SppA | 440 | 519 |
| 640441 | - | TTGGCCCGGTTCATGCA | 85 | - BR0648 - - phage SPO1 DNA polymerase-related protein | 21 | 31 |
| 934020 | + | GTGGTACCTCGCTTGCT | 85 | - BR0962 - - conserved hypothetical protein | 482 | 516 |
| 1485038 | - | CTGGCTGGACGCTTGCT | 85 | - BR1534 - - conserved hypothetical protein | 200 | 692 |
| 1625798 | - | TTGGGACATTTATTGCA | 85 | - BR1681 - - conserved hypothetical protein | 47 | 198 |
