| Position | Strand | Sequence | Score | Description | Distance upstream | Intergenic size |
| 1019275 | + | CTGGCACAGTTTATGCT | 89 | - BMEI0978 E COG0347 NITROGEN REGULATORY PROTEIN P-II | 45 | 244 |
| 2051624 | + | ATTGCACGGCGCTTGCT | 89 | - BMEI1993 S COG3672 Hypothetical Exported Protein | 324 | 514 |
| 2076336 | + | CCGGCACAGCCCTTGCT | 89 | - BMEI2019 E COG0159 TRYPTOPHAN SYNTHASE ALPHA CHAIN | 33 | 395 |
| 1344717 | - | TTGGCAGAAAGATTGCT | 87 | - BMEI1296 T COG0317 GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE | 76 | 211 |
| 1188819 | - | CTGGCATGGGAGGTGCT | 86 | - BMEI1142 E COG0346 LACTOYLGLUTATHIONE LYASE | 11 | 34 |
| 1412784 | - | ATGGCGCGGGGCTTGCC | 86 | - BMEI1357 T COG0642 HISTIDINE PROTEIN KINASE DIVJ | 214 | 813 |
| 161127 | + | CTGGCATGATTCTTGTT | 85 | - BMEI0167 P COG0004 AMMONIUM TRANSPORTER | 52 | 223 |
| 185289 | + | TTGGCAAAGCGGTTGCG | 85 | - BMEI0190 T COG3605 PHOSPHOENOLPYRUVATE-PROTEIN PHOSPHOTRANSFERASE PTSP | 8 | 328 |
| 363485 | + | TTGGGACATTTATTGCA | 85 | - BMEI0352 - - hypothetical transcription regulator | 880 | 1177 |
| 503115 | + | CTGGCTGGACGCTTGCT | 85 | - BMEI0482 R COG0433 Hypothetical ATP-binding protein | 287 | 732 |
| 1054376 | - | GTGGTACCTCGCTTGCT | 85 | - BMEI1015 - - Hypothetical Protein | 403 | 406 |
| 1831157 | + | TTGGCACATCAATCGCA | 85 | - BMEI1793 O COG0616 PUTATIVE PROTEASE IV | 499 | 609 |
