These sequences have been scanned for potential sigma54(RpoN)-binding sites using the promscan.pl script:

GenomeSizeG+C content
Agrobacterium tumefaciens str. C58 (U. Washington) chromosome circular, complete sequence28414900.59
Agrobacterium tumefaciens str. C58 (U. Washington) chromosome linear, complete sequence20755600.59
Agrobacterium tumefaciens str. C58 (U. Washington) plasmid AT, complete sequence5427800.57
Agrobacterium tumefaciens str. C58 (U. Washington) plasmid Ti, complete sequence2142340.56
Agrobacterium tumefaciens strain C58 circular chromosome, complete sequence28415810.59
Agrobacterium tumefaciens strain C58 linear chromosome, complete sequence20747820.59
Agrobacterium tumefaciens strain C58 plasmid AT, complete sequence5428690.57
Agrobacterium tumefaciens strain C58 plasmid Ti, complete sequence2143310.56
Aquifex aeolicus complete genome15513350.43
Aquifex aeolicus plasmid ece1, complete sequence394560.36
Bacillus anthracis str. Ames, complete genome52272930.35
Bacillus cereus ATCC 14579 plasmid pBClin15, complete sequence151000.38
Bacillus cereus ATCC 14579, complete genome54118090.35
Bacillus halodurans, complete genome42023530.43
Bacillus subtilis, complete genome42148140.43
Bifidobacterium longum NCC2705, complete genome22566460.60
Bordetella bronchiseptica, complete genome53391790.68
Bordetella parapertussis, complete genome47735510.68
Bordetella pertussis, complete genome40861890.67
Borrelia burgdorferi B31 plasmid cp32-1, complete sequence307500.29
Borrelia burgdorferi B31 plasmid cp32-3, complete sequence302230.28
Borrelia burgdorferi B31 plasmid cp32-4, complete sequence302990.29
Borrelia burgdorferi B31 plasmid cp32-6, complete sequence298380.29
Borrelia burgdorferi B31 plasmid cp32-7, complete sequence308000.29
Borrelia burgdorferi B31 plasmid cp32-8, complete sequence308850.29
Borrelia burgdorferi B31 plasmid cp32-9, complete sequence306510.29
Borrelia burgdorferi B31 plasmid lp21, complete sequence187530.20
Borrelia burgdorferi B31 plasmid lp5, complete sequence52270.23
Borrelia burgdorferi B31 plasmid lp56, complete sequence529710.27
Borrelia burgdorferi plasmid cp26, complete sequence264980.26
Borrelia burgdorferi plasmid cp9, complete sequence93860.23
Borrelia burgdorferi plasmid lp17, complete sequence168230.23
Borrelia burgdorferi plasmid lp25, complete sequence241700.23
Borrelia burgdorferi plasmid lp28-1, complete sequence269210.32
Borrelia burgdorferi plasmid lp28-2, complete sequence297660.31
Borrelia burgdorferi plasmid lp28-3, complete sequence285990.25
Borrelia burgdorferi plasmid lp28-4, complete sequence273230.24
Borrelia burgdorferi plasmid lp36, complete sequence368490.26
Borrelia burgdorferi plasmid lp38, complete sequence388270.26
Borrelia burgdorferi plasmid lp54, complete sequence535590.28
Borrelia burgdorferi, complete genome9106830.28
Bradyrhizobium japonicum, complete genome91058280.64
Brucella melitensis chromosome I, complete sequence21171440.57
Brucella melitensis chromosome II, complete sequence11777870.57
Brucella suis 1330 chromosome I, complete sequence21077920.57
Brucella suis 1330 chromosome II, complete sequence12073810.57
Buchnera aphidicola (Baizongia pistaciae), complete genome6159800.25
Buchnera aphidicola str. APS (Acyrthosiphon pisum), complete genome6406810.26
Buchnera aphidicola str. Sg (Schizaphis graminum), complete genome6414540.25
Buchnera sp. APS plasmid pLeu, complete sequence77860.26
Buchnera sp. APS plasmid pTrp, complete sequence72580.30
Campylobacter jejuni, complete genome16414810.30
Candidatus Blochmannia floridanus, complete genome7055570.27
Caulobacter crescentus CB15, complete genome40169470.67
Chlamydia muridarum plasmid pMoPn, complete sequence75010.35
Chlamydia muridarum, complete genome10729330.40
Chlamydia pneumoniae AR39 Main Chromosome12297890.40
Chlamydia trachomatis, complete genome10425190.41
Chlamydophila caviae GPIC plasmid pCpGP1, complete sequence79660.33
Chlamydophila caviae GPIC, complete genome11733900.39
Chlamydophila pneumoniae CWL029 complete genome12302300.40
Chlamydophila pneumoniae J138, complete genome12265650.40
Chlamydophila pneumoniae TW-183, complete genome12259350.40
Chlorobium tepidum TLS, complete genome21549390.56
Clostridium acetobutylicum ATCC824 complete genome39408800.30
Clostridium acetobutylicum plasmid pSOL1, complete sequence1920000.30
Clostridium perfringens plasmid pCP13, complete sequence543100.25
Clostridium perfringens, complete genome30314300.28
Clostridium tetani E88, complete genome27992510.28
Coxiella burnetii RSA 493, complete genome19952750.42
Enterococcus faecalis V583, complete genome32180310.37
Escherichia coli CFT073, complete genome52312350.50
Escherichia coli K12, complete genome46392210.50
Escherichia coli O157:H7 EDL933, complete genome55260320.50
Escherichia coli O157:H7, complete genome54984500.50
Escherichia coli plasmid pO157, complete sequence927210.47
Escherichia coli plasmid pOSAK1, complete sequence33060.43
Fusobacterium nucleatum subsp. nucleatum ATCC 25586, complete genome21745000.27
Haemophilus ducreyi 35000HP, complete genome16989550.38
Haemophilus influenzae Rd, complete genome18300690.38
Helicobacter hepaticus ATCC 51449 complete genome17991460.35
Helicobacter pylori 26695, complete genome16678330.38
Helicobacter pylori, strain J99 complete genome16438310.39
Lactobacillus plantarum WCFS1, complete genome33082740.44
Lactococcus lactis subsp. lactis, complete genome23655890.35
Leptospira interrogans serovar lai str. 56601 chromosome I, complete sequence43322410.35
Leptospira interrogans serovar lai str. 56601 chromosome II, complete sequence3589430.35
Listeria innocua Clip11262, complete genome30112080.37
Listeria innocua plasmid pLI100, complete sequence819050.35
Listeria monocytogenes strain EGD, complete genome29445280.37
Mesorhizobium loti plasmid pMLa, complete sequence3519110.59
Mesorhizobium loti plasmid pMLb, complete sequence2083150.59
Mesorhizobium loti, complete genome70360740.62
Neisseria meningitidis serogroup A strain Z2491 complete genome21844060.51
Neisseria meningitidis serogroup B strain MC58 complete genome22723510.51
Nitrosomonas europaea ATCC 19718, complete genome28120940.50
Nostoc sp. PCC 7120 complete genome64137710.41
Nostoc sp. PCC 7120 plasmid pCC7120alpha, complete sequence4081010.40
Nostoc sp. PCC 7120 plasmid pCC7120beta, complete sequence1866140.40
Nostoc sp. PCC 7120 plasmid pCC7120delta, complete sequence554140.41
Nostoc sp. PCC 7120 plasmid pCC7120epsilon, complete sequence403400.40
Nostoc sp. PCC 7120 plasmid pCC7120gamma, complete sequence1019650.41
Nostoc sp. PCC 7120 plasmid pCC7120zeta, complete sequence55840.44
Oceanobacillus iheyensis HTE831, complete genome36305280.35
Pasteurella multocida, complete genome22574870.40
Pirellula sp., complete genome71455760.55
Prochlorococcus marinus str. MIT 9313, complete genome24108730.50
Prochlorococcus marinus subsp. marinus str. CCMP1375, complete genome17510800.36
Prochlorococcus marinus subsp. pastoris str. CCMP1378, complete genome16579900.30
Pseudomonas aeruginosa PA01, complete genome62644030.66
Pseudomonas putida KT2440, complete genome61818630.61
Pseudomonas syringae pv. tomato str. DC3000, complete genome63971260.58
Ralstonia solanacearum megaplasmid, complete sequence20945090.66
Ralstonia solanacearum, complete genome37164130.67
Salmonella enterica subsp. enterica serovar Typhi Ty2, complete genome47919500.52
Salmonella enterica subsp. enterica serovar Typhi plasmid pHCM1, complete sequence2181600.47
Salmonella enterica subsp. enterica serovar Typhi plasmid pHCM2, complete sequence1065160.50
Salmonella enterica subsp. enterica serovar Typhi, complete genome48090370.52
Salmonella typhimurium LT2 plasmid pSLT, complete sequence939390.53
Salmonella typhimurium LT2, complete genome48574320.52
Shewanella oneidensis MR-1 megaplasmid, complete sequence1616130.43
Shewanella oneidensis MR-1, complete genome49697950.45
Shigella flexneri 2a str. 2457T, complete genome45993270.50
Shigella flexneri 2a str. 301, complete genome46072030.50
Sinorhizobium meliloti 1021 complete genomes36541350.62
Sinorhizobium meliloti plasmid pSymA, complete sequence13542260.60
Sinorhizobium meliloti plasmid pSymB, complete sequence16833330.62
Synechococcus sp. WH 8102, complete genome24344280.59
Synechocystis sp. PCC 6803, complete genome35734700.47
Thermoanaerobacter tengcongensis strain MB4T, complete genome26894450.37
Thermosynechococcus elongatus BP-1, complete genome25938570.53
Treponema pallidum complete genome11379450.52
Vibrio cholerae chromosome I, complete chromosome29611180.47
Vibrio cholerae chromosome II, complete chromosome10723110.46
Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete sequence32885580.45
Vibrio parahaemolyticus RIMD 2210633 chromosome II, complete sequence18772120.45
Vibrio vulnificus CMCP6 chromosome I, complete sequence32819450.46
Vibrio vulnificus CMCP6 chromosome II, complete sequence18448530.47
Xanthomonas axonopodis pv. citri str. 306, complete genome51755540.64
Xanthomonas campestris pv. campestris str. ATCC 33913, complete genome50761880.65
Xylella fastidiosa 9a5c, complete genome26793060.52
Xylella fastidiosa Temecula1 plasmid pXFPD1.3, complete sequence13460.53
Xylella fastidiosa Temecula1, complete genome25198020.51
Xylella fastidiosa plasmid pXF1.3, complete sequence12860.55
Xylella fastidiosa plasmid pXF51, complete sequence511580.49
Yersinia pestis CO92 plasmid pCD1, complete sequence703050.44
Yersinia pestis CO92 plasmid pMT1, complete sequence962100.50
Yersinia pestis CO92 plasmid pPCP1, complete sequence96120.45
Yersinia pestis KIM, complete genome46007550.47
Yersinia pestis strain CO92, complete genome46537280.47

Last updated: 01 09 2003
| Home | Tools | Explanation | News | Data | Software | Contact | Links |